Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
STAD rs111510118 chr1:227323316 G/A 0 405 14.37 14.15 1.48 KM Plot
STAD rs1115246 chr1:197037449 A/G 5.24E-7 406 5.8 17.77 14.07 KM Plot
STAD rs111721606 chr1:227320879 T/G 0 405 14.37 14.15 1.48 KM Plot
STAD rs11187616 chr10:95476271 G/T 3.07E-5 400 14.07 17.5 6.1 KM Plot
STAD rs11202064 chr10:88299731 A/G 2.21E-6 406 14.92 12.75 1.5 KM Plot
STAD rs11219768 chr11:99272474 C/T 1.56E-12 392 14.55 13.57 2.5 KM Plot
STAD rs11219802 chr11:99282104 A/G 1.46E-12 392 14.57 13.57 2.5 KM Plot
STAD rs11231774 chr11:64144009 A/G 8.17E-7 397 14.23 15.92 6.83 KM Plot
STAD rs112554566 chr1:227388108 G/A 0 404 14.27 14.45 1.48 KM Plot
STAD rs112787790 chr1:227270187 G/A 0 406 14.27 14.23 1.48 KM Plot
STAD rs11311263 chr1:197010737 GC/G 1.66E-7 404 5.8 17.43 14.13 KM Plot
STAD rs113211748 chr1:227434839 T/C 0 405 14.27 14.45 1.48 KM Plot
STAD rs113419565 chr1:227443868 C/T 0 404 14.25 14.45 1.48 KM Plot
STAD rs113820132 chr1:227290511 GAATT/G 0 405 14.37 14.15 1.48 KM Plot
STAD rs113923498 chr1:227386508 T/C 0 404 14.27 14.45 1.48 KM Plot